PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.IY510
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ZF-HD
Protein Properties Length: 247aa    MW: 26666.7 Da    PI: 8.2376
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.IY510genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer28.73.1e-0968864058
  ZF-HD_dimer 40 alkCaACgCHRnFHRreve 58
                 a+ CaAC+CHRnFHR+e +
  Araip.IY510 68 AVICAACNCHRNFHRKEID 86
                 778*************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-65887IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.9E-66885IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.14E-20171245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-31174246IPR009057Homeodomain-like
TIGRFAMsTIGR015653.2E-24184241IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEFDEQEEQE EELGIPEAPQ PQATQACYDS LGNSAKLTGD GTAASGFGRK GAAASSVRYR  60
ECQKNHAAVI CAACNCHRNF HRKEIDGDIR GGSGAGTLHH HRPQPPPPHL HQFSPYYHHR  120
GPPYPAGYLH HLATPPMAQH RPLALPAAVS GGGLSRDEED MSNPSSSGGG GGGGGGGCGS  180
GSSKKRFRTK FTQEQKDKML AFAEQVGWRI QKQDEAMVEQ FCAEACVKRS VLKVWMHNNK  240
NTLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-261832421675ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015932960.11e-136PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
SwissprotA2Z2598e-50ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A151U0903e-94A0A151U090_CAJCA; ZF-HD homeobox protein At4g24660 family
STRINGGLYMA14G35770.11e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-43homeobox protein 22